As more companies strive for net-zero emissions, mitigating indirect greenhouse gas emissions embedded in value chains—especially in logistics activities—has become a critical priority. In the European logistics sector, sustainability and energy efficiency are receiving growing attention, given the sector’s intersectional role in both transportation and construction. This transition toward low-carbon logistics design not only reduces carbon emissions but also yields financial benefits, including operational cost savings and new market opportunities. This study examines the impact of passive design strategies and low-carbon technologies in a Swedish logistics center, assessed using the low-carbon design criteria from the BREEAM International standard, version 6. The findings show that passive energy-efficient measures, such as the installation of 47 skylights for natural daylighting, reduced light power density in accordance with AHSHARE 90.1-2019 and the integration of free night flushing, contribute to a 23% reduction in total energy consumption. In addition, the integration of 600 PV panels and 480 batteries with a capacity of 268 ampere-hours and 13.5 kWh storage, operating at 50 volts, delivers a further 56% reduction in carbon emissions. By optimizing the interaction between passive design and active low-carbon technologies, this research presents a comprehensive feasibility analysis that promotes sustainable logistics practices while ensuring a future-proof, low-carbon operational model.